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"check_dataset" ] }, { "page": "check_high_correlations", "title": "check_high_correlations", "topics": [ "check_high_correlations" ] }, { "page": "check_parameters_near_bounds", "title": "check_parameters_near_bounds", "topics": [ "check_parameters_near_bounds" ] }, { "page": "check_pharmpy", "title": "Checks version of Pharmpy/pharmr", "topics": [ "check_pharmpy" ] }, { "page": "check_setup", "title": "Checks setup of Pharmpy/pharmr", "topics": [ "check_setup" ] }, { "page": "cholesky_decompose", "title": "cholesky_decompose", "topics": [ "cholesky_decompose" ] }, { "page": "cleanup_model", "title": "cleanup_model", "topics": [ "cleanup_model" ] }, { "page": "convert_model", "title": "convert_model", "topics": [ "convert_model" ] }, { "page": "convert_unit", "title": "convert_unit", "topics": [ "convert_unit" ] }, { "page": "create_basic_kpd_model", "title": "create_basic_kpd_model", "topics": [ "create_basic_kpd_model" ] }, { "page": "create_basic_pd_model", "title": "create_basic_pd_model", "topics": [ "create_basic_pd_model" ] }, { "page": "create_basic_pk_model", "title": "create_basic_pk_model", "topics": [ "create_basic_pk_model" ] }, { "page": "create_config_template", "title": "create_config_template", "topics": [ "create_config_template" ] }, { "page": "create_joint_distribution", "title": "create_joint_distribution", "topics": [ "create_joint_distribution" ] }, { "page": "create_report", "title": "create_report", "topics": [ "create_report" ] }, { "page": "create_rng", "title": "create_rng", "topics": [ "create_rng" ] }, { "page": "create_symbol", "title": "create_symbol", "topics": [ "create_symbol" ] }, { "page": "deidentify_data", "title": "deidentify_data", "topics": [ "deidentify_data" ] }, { "page": "display_odes", "title": "display_odes", "topics": [ "display_odes" ] }, { "page": "drop_columns", "title": "drop_columns", "topics": [ "drop_columns" ] }, { "page": "drop_dropped_columns", "title": "drop_dropped_columns", "topics": [ "drop_dropped_columns" ] }, { "page": "evaluate_epsilon_gradient", "title": "evaluate_epsilon_gradient", "topics": [ "evaluate_epsilon_gradient" ] }, { "page": "evaluate_eta_gradient", "title": "evaluate_eta_gradient", "topics": [ "evaluate_eta_gradient" ] }, { "page": "evaluate_expression", "title": "evaluate_expression", "topics": [ "evaluate_expression" ] }, { "page": "evaluate_individual_prediction", "title": "evaluate_individual_prediction", "topics": [ "evaluate_individual_prediction" ] }, { "page": "evaluate_population_prediction", "title": "evaluate_population_prediction", "topics": [ "evaluate_population_prediction" ] }, { "page": "evaluate_weighted_residuals", "title": "evaluate_weighted_residuals", "topics": [ "evaluate_weighted_residuals" ] }, { "page": "expand_additional_doses", "title": "expand_additional_doses", "topics": [ "expand_additional_doses" ] }, { "page": "export_model_files", "title": "export_model_files", "topics": [ "export_model_files" ] }, { "page": "filter_dataset", "title": "filter_dataset", "topics": [ "filter_dataset" ] }, { "page": "find_clearance_parameters", "title": "find_clearance_parameters", "topics": [ "find_clearance_parameters" ] }, { "page": "find_volume_parameters", "title": "find_volume_parameters", "topics": [ "find_volume_parameters" ] }, { "page": "fit", "title": "fit", "topics": [ "fit" ] }, { "page": "fix_or_unfix_parameters", "title": "fix_or_unfix_parameters", "topics": [ "fix_or_unfix_parameters" ] }, { "page": "fix_parameters", "title": "fix_parameters", "topics": [ "fix_parameters" ] }, { "page": "fix_parameters_to", "title": "fix_parameters_to", "topics": [ "fix_parameters_to" ] }, { "page": "get_admid", "title": "get_admid", "topics": [ "get_admid" ] }, { "page": "get_baselines", "title": "get_baselines", "topics": [ "get_baselines" ] }, { "page": "get_bioavailability", "title": "get_bioavailability", "topics": [ "get_bioavailability" ] }, { "page": "get_central_volume_and_clearance", "title": "get_central_volume_and_clearance", "topics": [ "get_central_volume_and_clearance" ] }, { "page": "get_cmt", "title": "get_cmt", "topics": [ "get_cmt" ] }, { "page": "get_column_name", "title": "get_column_name", "topics": [ "get_column_name" ] }, { "page": "get_concentration_parameters_from_data", "title": "get_concentration_parameters_from_data", "topics": [ "get_concentration_parameters_from_data" ] }, { "page": "get_config_path", "title": "get_config_path", "topics": [ "get_config_path" ] }, { "page": "get_covariate_baselines", "title": "get_covariate_baselines", "topics": [ "get_covariate_baselines" ] }, { "page": "get_covariate_effects", "title": "get_covariate_effects", "topics": [ "get_covariate_effects" ] }, { "page": "get_doseid", "title": "get_doseid", "topics": [ "get_doseid" ] }, { "page": "get_doses", "title": "get_doses", "topics": [ "get_doses" ] }, { "page": "get_dv_symbol", "title": "get_dv_symbol", "topics": [ "get_dv_symbol" ] }, { "page": "get_evid", "title": "get_evid", "topics": [ "get_evid" ] }, { "page": "get_ids", "title": "get_ids", "topics": [ "get_ids" ] }, { "page": "get_individual_parameters", "title": "get_individual_parameters", "topics": [ "get_individual_parameters" ] }, { "page": "get_individual_prediction_expression", "title": "get_individual_prediction_expression", "topics": [ "get_individual_prediction_expression" ] }, { "page": "get_initial_conditions", "title": "get_initial_conditions", "topics": [ "get_initial_conditions" ] }, { "page": "get_lag_times", "title": "get_lag_times", "topics": [ "get_lag_times" ] }, { "page": "get_mdv", "title": "get_mdv", "topics": [ "get_mdv" ] }, { "page": "get_model_code", "title": "get_model_code", "topics": [ "get_model_code" ] }, { "page": "get_model_covariates", "title": "get_model_covariates", "topics": [ "get_model_covariates" ] }, { "page": "get_mu_connected_to_parameter", "title": "get_mu_connected_to_parameter", "topics": [ "get_mu_connected_to_parameter" ] }, { "page": "get_nested_model", "title": "get_nested_model", "topics": [ "get_nested_model" ] }, { "page": "get_number_of_individuals", "title": "get_number_of_individuals", "topics": [ "get_number_of_individuals" ] }, { "page": "get_number_of_observations", "title": "get_number_of_observations", "topics": [ "get_number_of_observations" ] }, { "page": "get_number_of_observations_per_individual", "title": "get_number_of_observations_per_individual", "topics": [ "get_number_of_observations_per_individual" ] }, { "page": "get_number_of_peripheral_compartments", "title": "get_number_of_peripheral_compartments", "topics": [ "get_number_of_peripheral_compartments" ] }, { "page": "get_number_of_transit_compartments", "title": "get_number_of_transit_compartments", "topics": [ "get_number_of_transit_compartments" ] }, { "page": "get_observation_expression", "title": "get_observation_expression", "topics": [ "get_observation_expression" ] }, { "page": "get_observations", "title": "get_observations", "topics": [ "get_observations" ] }, { "page": "get_omegas", "title": "get_omegas", "topics": [ "get_omegas" ] }, { "page": "get_parameter_rv", "title": "get_parameter_rv", "topics": [ "get_parameter_rv" ] }, { "page": "get_pd_parameters", "title": "get_pd_parameters", "topics": [ "get_pd_parameters" ] }, { "page": "get_pk_parameters", "title": "get_pk_parameters", "topics": [ "get_pk_parameters" ] }, { "page": "get_population_prediction_expression", "title": "get_population_prediction_expression", "topics": [ "get_population_prediction_expression" ] }, { "page": "get_rv_parameters", "title": "get_rv_parameters", "topics": [ "get_rv_parameters" ] }, { "page": "get_sigmas", "title": "get_sigmas", "topics": [ "get_sigmas" ] }, { "page": "get_thetas", "title": "get_thetas", "topics": [ "get_thetas" ] }, { "page": "get_unit_of", "title": "get_unit_of", "topics": [ "get_unit_of" ] }, { "page": "get_zero_order_inputs", "title": "get_zero_order_inputs", "topics": [ "get_zero_order_inputs" ] }, { "page": "greekify_model", "title": "greekify_model", "topics": [ "greekify_model" ] }, { "page": "has_additive_error_model", "title": "has_additive_error_model", "topics": [ "has_additive_error_model" ] }, { "page": "has_combined_error_model", "title": "has_combined_error_model", "topics": [ "has_combined_error_model" ] }, { "page": "has_covariate_effect", "title": "has_covariate_effect", "topics": [ "has_covariate_effect" ] }, { "page": "has_first_order_absorption", "title": "has_first_order_absorption", "topics": [ "has_first_order_absorption" ] }, { "page": "has_first_order_elimination", "title": "has_first_order_elimination", "topics": [ "has_first_order_elimination" ] }, { "page": "has_instantaneous_absorption", "title": "has_instantaneous_absorption", "topics": [ "has_instantaneous_absorption" ] }, { "page": "has_linear_odes", "title": "has_linear_odes", "topics": [ "has_linear_odes" ] }, { "page": "has_linear_odes_with_real_eigenvalues", "title": "has_linear_odes_with_real_eigenvalues", "topics": [ "has_linear_odes_with_real_eigenvalues" ] }, { "page": "has_michaelis_menten_elimination", "title": "has_michaelis_menten_elimination", "topics": [ "has_michaelis_menten_elimination" ] }, { "page": "has_mixed_mm_fo_elimination", "title": "has_mixed_mm_fo_elimination", "topics": [ "has_mixed_mm_fo_elimination" ] }, { "page": "has_mu_reference", "title": "has_mu_reference", "topics": [ "has_mu_reference" ] }, { "page": "has_odes", "title": "has_odes", "topics": [ "has_odes" ] }, { "page": "has_presystemic_metabolite", "title": "has_presystemic_metabolite", "topics": [ "has_presystemic_metabolite" ] }, { "page": "has_proportional_error_model", "title": "has_proportional_error_model", "topics": [ "has_proportional_error_model" ] }, { "page": "has_random_effect", "title": "has_random_effect", "topics": [ "has_random_effect" ] }, { "page": "has_seq_zo_fo_absorption", "title": "has_seq_zo_fo_absorption", "topics": [ "has_seq_zo_fo_absorption" ] }, { "page": "has_weibull_absorption", "title": "has_weibull_absorption", "topics": [ "has_weibull_absorption" ] }, { "page": "has_weighted_error_model", "title": "has_weighted_error_model", "topics": [ "has_weighted_error_model" ] }, { "page": "has_zero_order_absorption", "title": "has_zero_order_absorption", "topics": [ "has_zero_order_absorption" ] }, { "page": "has_zero_order_elimination", "title": "has_zero_order_elimination", "topics": [ "has_zero_order_elimination" ] }, { "page": "infer_datatypes", "title": "infer_datatypes", "topics": [ "infer_datatypes" ] }, { "page": "insert_ebes_into_dataset", "title": "insert_ebes_into_dataset", "topics": [ "insert_ebes_into_dataset" ] }, { "page": "install_pharmpy", "title": "Install Pharmpy", "topics": [ "install_pharmpy" ] }, { "page": "install_pharmpy_devel", "title": "Install Pharmpy (with specified version)", "topics": [ "install_pharmpy_devel" ] }, { "page": "is_binary", "title": "is_binary", "topics": [ "is_binary" ] }, { "page": "is_linearized", "title": "is_linearized", "topics": [ "is_linearized" ] }, { "page": "is_real", "title": "is_real", "topics": [ "is_real" ] }, { "page": "is_simulation_model", "title": "is_simulation_model", "topics": [ "is_simulation_model" ] }, { "page": "is_strictness_fulfilled", "title": "is_strictness_fulfilled", "topics": [ "is_strictness_fulfilled" ] }, { "page": "list_models", "title": "list_models", "topics": [ "list_models" ] }, { "page": "list_time_varying_covariates", "title": "list_time_varying_covariates", "topics": [ "list_time_varying_covariates" ] }, { "page": "load_dataset", "title": "load_dataset", "topics": [ "load_dataset" ] }, { "page": "load_example_model", "title": "load_example_model", "topics": [ "load_example_model" ] }, { "page": "load_example_modelfit_results", "title": "load_example_modelfit_results", "topics": [ "load_example_modelfit_results" ] }, { "page": "make_declarative", "title": "make_declarative", "topics": [ "make_declarative" ] }, { "page": "map_eta_parameters", "title": "map_eta_parameters", "topics": [ "map_eta_parameters" ] }, { "page": "mu_reference_model", "title": "mu_reference_model", "topics": [ "mu_reference_model" ] }, { "page": "omit_data", "title": "omit_data", "topics": [ "omit_data" ] }, { "page": "open_context", "title": "open_context", "topics": [ "open_context" ] }, { "page": "plot_abs_cwres_vs_ipred", "title": "plot_abs_cwres_vs_ipred", "topics": [ "plot_abs_cwres_vs_ipred" ] }, { "page": "plot_cwres_vs_idv", "title": "plot_cwres_vs_idv", "topics": [ "plot_cwres_vs_idv" ] }, { "page": "plot_dv_vs_ipred", "title": "plot_dv_vs_ipred", "topics": [ "plot_dv_vs_ipred" ] }, { "page": "plot_dv_vs_pred", "title": "plot_dv_vs_pred", "topics": [ "plot_dv_vs_pred" ] }, { "page": "plot_eta_distributions", "title": "plot_eta_distributions", "topics": [ "plot_eta_distributions" ] }, { "page": "plot_individual_predictions", "title": "plot_individual_predictions", "topics": [ "plot_individual_predictions" ] }, { "page": "plot_iofv_vs_iofv", "title": "plot_iofv_vs_iofv", "topics": [ "plot_iofv_vs_iofv" ] }, { "page": "plot_transformed_eta_distributions", "title": "plot_transformed_eta_distributions", "topics": [ "plot_transformed_eta_distributions" ] }, { "page": "plot_vpc", "title": "plot_vpc", "topics": [ "plot_vpc" ] }, { "page": "predict_influential_individuals", "title": "predict_influential_individuals", "topics": [ "predict_influential_individuals" ] }, { "page": "predict_influential_outliers", "title": "predict_influential_outliers", "topics": [ "predict_influential_outliers" ] }, { "page": "predict_outliers", "title": "predict_outliers", "topics": [ "predict_outliers" ] }, { "page": "print_fit_summary", "title": "print_fit_summary", "topics": [ "print_fit_summary" ] }, { "page": "print_log", "title": "print_log", "topics": [ "print_log" ] }, { "page": "print_model_code", "title": "print_model_code", "topics": [ "print_model_code" ] }, { "page": "print_model_symbols", "title": "print_model_symbols", "topics": [ "print_model_symbols" ] }, { "page": "print_pharmpy_version", "title": "Print pharmpy version", "topics": [ "print_pharmpy_version" ] }, { "page": "read_dataset_from_datainfo", "title": "read_dataset_from_datainfo", "topics": [ "read_dataset_from_datainfo" ] }, { "page": "read_model", "title": "read_model", "topics": [ "read_model" ] }, { "page": "read_model_from_string", "title": "read_model_from_string", "topics": [ "read_model_from_string" ] }, { "page": "read_modelfit_results", "title": "read_modelfit_results", "topics": [ "read_modelfit_results" ] }, { "page": "read_results", "title": "read_results", "topics": [ "read_results" ] }, { "page": "remove_bioavailability", "title": "remove_bioavailability", "topics": [ "remove_bioavailability" ] }, { "page": "remove_covariate_effect", "title": "remove_covariate_effect", "topics": [ "remove_covariate_effect" ] }, { "page": "remove_derivative", "title": "remove_derivative", "topics": [ "remove_derivative" ] }, { "page": "remove_error_model", "title": "remove_error_model", "topics": [ "remove_error_model" ] }, { "page": "remove_estimation_step", "title": "remove_estimation_step", "topics": [ "remove_estimation_step" ] }, { "page": "remove_iiv", "title": "remove_iiv", "topics": [ "remove_iiv" ] }, { "page": "remove_iov", "title": "remove_iov", "topics": [ "remove_iov" ] }, { "page": "remove_lag_time", "title": "remove_lag_time", "topics": [ "remove_lag_time" ] }, { "page": "remove_loq_data", "title": "remove_loq_data", "topics": [ "remove_loq_data" ] }, { "page": "remove_parameter_uncertainty_step", "title": "remove_parameter_uncertainty_step", "topics": [ "remove_parameter_uncertainty_step" ] }, { "page": "remove_peripheral_compartment", "title": "remove_peripheral_compartment", "topics": [ "remove_peripheral_compartment" ] }, { "page": "remove_predictions", "title": "remove_predictions", "topics": [ "remove_predictions" ] }, { "page": "remove_residuals", "title": "remove_residuals", "topics": [ "remove_residuals" ] }, { "page": "remove_unused_columns", "title": "remove_unused_columns", "topics": [ "remove_unused_columns" ] }, { "page": "remove_unused_parameters_and_rvs", "title": "remove_unused_parameters_and_rvs", "topics": [ "remove_unused_parameters_and_rvs" ] }, { "page": "rename_symbols", "title": "rename_symbols", "topics": [ "rename_symbols" ] }, { "page": "replace_fixed_thetas", "title": "replace_fixed_thetas", "topics": [ "replace_fixed_thetas" ] }, { "page": "replace_non_random_rvs", "title": "replace_non_random_rvs", "topics": [ "replace_non_random_rvs" ] }, { "page": "resample_data", "title": "resample_data", "topics": [ "resample_data" ] }, { "page": "reset_index", "title": "Reset index", "topics": [ "reset_index" ] }, { "page": "reset_indices_results", "title": "Reset result indices", "topics": [ "reset_indices_results" ] }, { "page": "retrieve_model", "title": "retrieve_model", "topics": [ "retrieve_model" ] }, { "page": "retrieve_modelfit_results", "title": "retrieve_modelfit_results", "topics": [ "retrieve_modelfit_results" ] }, { "page": "retrieve_models", "title": "retrieve_models", "topics": [ "retrieve_models" ] }, { "page": "run_allometry", "title": "run_allometry", "topics": [ "run_allometry" ] }, { "page": "run_amd", "title": "run_amd", "topics": [ "run_amd" ] }, { "page": "run_bootstrap", "title": "run_bootstrap", "topics": [ "run_bootstrap" ] }, { "page": "run_covsearch", "title": "run_covsearch", "topics": [ "run_covsearch" ] }, { "page": "run_estmethod", "title": "run_estmethod", "topics": [ "run_estmethod" ] }, { "page": "run_iivsearch", "title": "run_iivsearch", "topics": [ "run_iivsearch" ] }, { "page": "run_iovsearch", "title": "run_iovsearch", "topics": [ "run_iovsearch" ] }, { "page": "run_linearize", "title": "run_linearize", "topics": [ "run_linearize" ] }, { "page": "run_modelfit", "title": "run_modelfit", "topics": [ "run_modelfit" ] }, { "page": "run_modelrank", "title": "run_modelrank", "topics": [ "run_modelrank" ] }, { "page": "run_modelsearch", "title": "run_modelsearch", "topics": [ "run_modelsearch" ] }, { "page": "run_pdsearch", "title": "run_pdsearch", "topics": [ "run_pdsearch" ] }, { "page": "run_qa", "title": "run_qa", "topics": [ "run_qa" ] }, { "page": "run_retries", "title": "run_retries", "topics": [ "run_retries" ] }, { "page": "run_ruvsearch", "title": "run_ruvsearch", "topics": [ "run_ruvsearch" ] }, { "page": "run_simulation", "title": "run_simulation", "topics": [ "run_simulation" ] }, { "page": "run_structsearch", "title": "run_structsearch", "topics": [ "run_structsearch" ] }, { "page": "run_tool", "title": "run_tool", "topics": [ "run_tool" ] }, { "page": "run_vpc", "title": "run_vpc", "topics": [ "run_vpc" ] }, { "page": "sample_individual_estimates", "title": "sample_individual_estimates", "topics": [ "sample_individual_estimates" ] }, { "page": "sample_parameters_from_covariance_matrix", "title": "sample_parameters_from_covariance_matrix", "topics": [ "sample_parameters_from_covariance_matrix" ] }, { "page": "sample_parameters_uniformly", "title": "sample_parameters_uniformly", "topics": [ "sample_parameters_uniformly" ] }, { "page": "set_additive_error_model", "title": "set_additive_error_model", "topics": [ "set_additive_error_model" ] }, { "page": "set_baseline_effect", "title": "set_baseline_effect", "topics": [ "set_baseline_effect" ] }, { "page": "set_combined_error_model", "title": "set_combined_error_model", "topics": [ "set_combined_error_model" ] }, { "page": "set_covariates", "title": "set_covariates", "topics": [ "set_covariates" ] }, { "page": "set_dataset", "title": "set_dataset", "topics": [ "set_dataset" ] }, { "page": "set_description", "title": "set_description", "topics": [ "set_description" ] }, { "page": "set_direct_effect", "title": "set_direct_effect", "topics": [ "set_direct_effect" ] }, { "page": "set_dtbs_error_model", "title": "set_dtbs_error_model", "topics": [ "set_dtbs_error_model" ] }, { "page": "set_dvid", "title": "set_dvid", "topics": [ "set_dvid" ] }, { "page": "set_estimation_step", "title": "set_estimation_step", "topics": [ "set_estimation_step" ] }, { "page": "set_evaluation_step", "title": "set_evaluation_step", "topics": [ "set_evaluation_step" ] }, { "page": "set_first_order_absorption", "title": "set_first_order_absorption", "topics": [ "set_first_order_absorption" ] }, { "page": "set_first_order_elimination", "title": "set_first_order_elimination", "topics": [ "set_first_order_elimination" ] }, { "page": "set_iiv_on_ruv", "title": "set_iiv_on_ruv", "topics": [ "set_iiv_on_ruv" ] }, { "page": "set_initial_condition", "title": "set_initial_condition", "topics": [ "set_initial_condition" ] }, { "page": "set_initial_estimates", "title": "set_initial_estimates", "topics": [ "set_initial_estimates" ] }, { "page": "set_instantaneous_absorption", "title": "set_instantaneous_absorption", "topics": [ "set_instantaneous_absorption" ] }, { "page": "set_lloq_data", "title": "set_lloq_data", "topics": [ "set_lloq_data" ] }, { "page": "set_lower_bounds", "title": "set_lower_bounds", "topics": [ "set_lower_bounds" ] }, { "page": "set_michaelis_menten_elimination", "title": "set_michaelis_menten_elimination", "topics": [ "set_michaelis_menten_elimination" ] }, { "page": "set_mixed_mm_fo_elimination", "title": "set_mixed_mm_fo_elimination", "topics": [ "set_mixed_mm_fo_elimination" ] }, { "page": "set_n_transit_compartments", "title": "set_n_transit_compartments", "topics": [ "set_n_transit_compartments" ] }, { "page": "set_name", "title": "set_name", "topics": [ "set_name" ] }, { "page": "set_ode_solver", "title": "set_ode_solver", "topics": [ "set_ode_solver" ] }, { "page": "set_peripheral_compartments", "title": "set_peripheral_compartments", "topics": [ "set_peripheral_compartments" ] }, { "page": "set_placebo_model", "title": "set_placebo_model", "topics": [ "set_placebo_model" ] }, { 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